Scaffold Ga0126320_1371656

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0126320_1371656

Scaffold Ga0126320_1371656

Overview

Basic Information
Taxon OID	3300010146 Open in IMG/M
Scaffold ID	Ga0126320_1371656 Open in IMG/M
Source Dataset Name	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1227
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	Jasper ridge, California
Coordinates	Lat. (^o)	37.406	Long. (^o)	-122.2269	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041124	Metagenome / Metatranscriptome	160	Y
F104888	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126320_13716562	F041124	AGGAGG	MQPPNRLAHHEARLVALRERLVRTLGIHTARVLLDRALWQTAQRHPDLALLHHDECGLSFEALEQRYATRPQEEIEAALTDLSAEMLRILARLLGGEMARRMGTGHPGSRQMGAY*
Ga0126320_13716563	F104888	N/A	MLLGAALLSASLLARSLVAPDTHAAIGGCRSDPIVTLSDGNVLDLHATVTDTYDDVEQVSYTLYIPNGVWVTSEVDTSLLGGKDAFRYYGTKFQAPNTYSVSVQVNTGASQIPVVAATDLVGVN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.