Basic Information | |
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Taxon OID | 3300010146 Open in IMG/M |
Scaffold ID | Ga0126320_1406625 Open in IMG/M |
Source Dataset Name | Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 835 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates |
Source Dataset Sampling Location | ||||||||
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Location Name | Jasper ridge, California | |||||||
Coordinates | Lat. (o) | 37.406 | Long. (o) | -122.2269 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003556 | Metagenome / Metatranscriptome | 479 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126320_14066251 | F003556 | N/A | RWSGEVTTTTGNGYANTCTSLAALEQAGITESTTLVYGDDGLTYTKQCRKRLGEAYDVVAGESGMKCEGKLLEKREQGTFLRKRFVPSVNHTYPVPSFGRVVSKLPVRSNFNRAVSDEDYMAGKLLSAAYEHRHIASLRVLLLETAEQLSNSPYLDMRNQAMAYKYTAEELKHMTMNAKTLDPDYFGSFLQNVYGIWEQDLVECYISVCDGILGFQRVNRRSGKHVPHIAPRLPRALWDTAFESIVTVDVAL* |
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