Scaffold Ga0098043

Basic Information
Taxon OID	3300010148 Open in IMG/M
Scaffold ID	Ga0098043_1013404 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010148 Open in IMG/M

Scaffold ID

Ga0098043_1013404 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2686
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

2686

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F047370	Metagenome	150	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10134041	F047370	N/A	QEVNTDMMANAADSMFTALAWNAGAATLTPIITKGLGKVGRLAIGAKSKDAKELVNIARERGGLPLPMVMTAQENVGLLGGFANKFFKVLGIMPFINGIGKEALQGAEQAAGKNYLNNDVLKFGPLVKTGMLSATVWKQAEQAFIQNSNLINSSYKAFDTLADTIGNPKVIPTGHVKTMAKNYVDELAMKYPGLKGYGRSDMPMDLKGLEKLQGTGDPLALFYRHMELIDDFVTPKQYKGMMEELNRAISTTTYDNIRPQLWSIREALENDLNSFGGAITKETFLKDDAVKAAYETLKKTNPAAAEADMALKISESEKLKSKLYGANDTFSSLMNFYQRANITKVFKDYNATAFTNKALAGIGGMQKKKAQRFFNDLANDVFTRGDTDAILQFKQLLGASKIASRKDPTKGIGVTKGGGEALFNAAKARWMFNTYIKSFDSSTTRAGRSMLDEIMEESTVRAGINGAVDVMESMVQKGTGIDQTIDFSINKVKTGNNIFDATKIRFSPKDTSNFNINKFMRNLGIDDITDDVAKSKMTEILGGPQQAKQFERFLTYMKAVSDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPVAMRAFNDALNPEEQIRLLMGKKVGDGVPGVLGIGRRYFKGRDIQTAANVLQSPGVVGRLGLTQKREAFARLVNYLNEGDADIPRVDPKTVTPEEITERMGQLDAKVPAPNYNEQTIPKKNFETLFAQDYSGSSGDLQTDTNAVTMLSTATQNEAMVDAEEAPVEQEEKMIMSDLQLEDPVAKPPVAPVPPATGQVDPNKFAAIFPEDNLGQAIAQRGVRRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098043_1013404

Overview

Ecosystem & Geography

Associated Families

Sequences