NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098049_1041357

Scaffold Ga0098049_1041357


Overview

Basic Information
Taxon OID3300010149 Open in IMG/M
Scaffold IDGa0098049_1041357 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1483
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F081367Metagenome / Metatranscriptome114N
F084241Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0098049_10413572F081367AGGAGMSKKKPNIITPFNDRQRIRDLVNEVIDDTFISTHTPDTVTLNEFIILTLANKKFVFQDIAVDGLEDYVDIYLVGLKQKDDSYTVIDDGTNLIISFTESLGLDDSLFSSGDFEVKGKIVSR
Ga0098049_10413573F002188N/AMIKDLQKLLKQVHDPNEYQLEAHNLNHPLYWVFKAKNAKLKDLDLKLRPIRKEHARFDIFINGQYILEKDYLFEQFGKDFLVKFKKSNFPYSLSSSDEIKLEGDVEST*
Ga0098049_10413574F084241N/ALPEKFDNEPTHTKSLSPKKVVWGLEWDLTGGTGASTNSQVEKKMYNEYSDIIDFMSVRGSQETTFVDADTVKLTNVELPKVPIELTDSFNDSDRFRVYINGVYVKPAKYSYTGSYVDNEITFNFNTGSAISDTTLGYEIAVTDEIGITGKFIEL*
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