NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098056_1004208

Scaffold Ga0098056_1004208


Overview

Basic Information
Taxon OID3300010150 Open in IMG/M
Scaffold IDGa0098056_1004208 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5557
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F023963Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0098056_10042084F016597GGAMPLDRDTVPHTWEGTGNHGTYPFASSTGDSSYGLFFSPREMELFNDYNTELLGIIAQTGVNYYRIEPDSSDPNSIYGESEVKVTRDPVQVMCWVMLDEPETETNSFTVDVRRRIELYMHKDRITELDLVPRMDDFVEYDNQYFEIQRCGVPNFVFSYPQTKLGVIARCMSVREGVFDPNRDFVNKEYVGDSENPY*
Ga0098056_10042085F023963GGAGMATPSNKHQKSIEFDEVSLFSIDRAVYDWFNTKHATNIQGRKAPVTFGSWERFAQMQDNKYDDNLNRMRDPSGMLILPMISIRRGDVTYNNDRFVFQQATGAPRIEISRRVAMSNFDADRRVPFDGPHMYSTGRRRSDAPVMEIATVPYPDFVNIPYTITFWASYVRHANYFNDKMWQNAYPTDLTYKGYYFYAFIDSSTNENNEENYTDEERIIRSSFTMTVDGYLLKKNDVNVTRTASKMIISEGYIEEPAIKTPGHNSVDEILTEEKAVPPHQYADTIAMGADMFNRNSLNTASPSLAEYNDNESRVGGGKIDYNNPGARNPNSY*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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