Scaffold Ga0098056_1084187

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098056_1084187

Scaffold Ga0098056_1084187

Overview

Basic Information
Taxon OID	3300010150 Open in IMG/M
Scaffold ID	Ga0098056_1084187 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1088
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016013	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098056_10841873	F016013	GGAG	MPKELTTINKVDVSPLLKEVVNYAKDQNAVGDLEQLISKVPMKDSMDWKLISGVIMNSLVEWIMEDKDARLSLLQHLQG

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