NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098056_1089364

Scaffold Ga0098056_1089364


Overview

Basic Information
Taxon OID3300010150 Open in IMG/M
Scaffold IDGa0098056_1089364 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0098056_10893642F087884N/AMDNTQSYKITVGQYQELNSIDESLSLVEQNIYAVAAIKDITYEEASKIKMSEFKKIVDDLNAFNVKLLEKLRIKSKIFLNGTQYHLEHKPEKLTSGQLLDVINIRSNHQGEAVKVMHLLLAAMSRPKGGEYGDDKLNLEERAKLIQQVDLQEVWNVFVFFWNLWNDYLNDTEDSLSKWMGETLEMTKQI*

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