NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098056_1100620

Scaffold Ga0098056_1100620


Overview

Basic Information
Taxon OID3300010150 Open in IMG/M
Scaffold IDGa0098056_1100620 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010947Metagenome297Y
F040339Metagenome162Y
F054357Metagenome140Y
F092859Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0098056_11006201F054357N/ALERGLRKMANVAYRRGDIIMHPMSGKAWLHIAEVKFSGHRGYVYECINQKTGKKVTLSAENESIKLVSKTRKR*
Ga0098056_11006202F010947GAGGMRKDIKEMINPALVEKWNKNKNGSLNGIVFNKGDLVSRTDCDGESLGIVLEQDGVMATVQWTKEPEDIRLQRRIFVSSLKLISGVDK*
Ga0098056_11006203F040339AGGAGMSIRDNLDRETYGDLMYRLGQMDAILQDLQGTISRFHEESRRIREGHPPEIVKALDEVLGRIPAPQETEE*
Ga0098056_11006204F092859AGGAGMSDNNTDTITISENSEDKDTTVTIPLEFTAKLGVPQEMIDEGNRALNRFKWTMFALVGGYIAL
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