NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098061_1004579

Scaffold Ga0098061_1004579


Overview

Basic Information
Taxon OID3300010151 Open in IMG/M
Scaffold IDGa0098061_1004579 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6409
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-15.59Long. (o)-75.37Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065136Metagenome128Y
F087779Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0098061_10045793F087779GAGMGCVGWYNGGMKRHLIISAGAPTLDSDPKLCAVRVVEDGETIHFVGRVNFGLAICNIMQEWDCYKLVYTPSARDKFLGKTLDPTLLT*
Ga0098061_10045794F065136AGGAGMNNTIRITKQGGVQYTFENGYTLSIGCGVGHYSSNQDKDNSFGDCTEVEVAVLNPAGGWVALEYDVAGFVKASCIPSLFRAVENKDWEHVALLCGQEEYIHSENRRDEDPTSTQHQAGGYYPELDQYA*
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