Scaffold Ga0126318_10006556

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126318_10006556

Scaffold Ga0126318_10006556

Overview

Basic Information
Taxon OID	3300010152 Open in IMG/M
Scaffold ID	Ga0126318_10006556 Open in IMG/M
Source Dataset Name	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1181
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → unclassified Agromyces → Agromyces sp. Soil535	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	Southern Great Plains ARM Site, Oklahoma
Coordinates	Lat. (^o)	36.605	Long. (^o)	-97.485	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079536	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126318_100065562	F079536	AGGA	MSIDSPLPAVGSGHANEVLLKQLGEVTVQASRLEHLAVEIAQSLKISATSADAVDALQGPELTPPPWSTISAKDVKNWAASTRRLLEIRDSMFAASGTSRFAGSSGDTIATESADGTVFPADEQYLGRYLKRLTRQLAAGSELQSRLDYHDENGQRWPLATIYGQQSTGEGAEQPPMRLPEAWQRWLSA*

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