NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098059_1006253

Scaffold Ga0098059_1006253


Overview

Basic Information
Taxon OID3300010153 Open in IMG/M
Scaffold IDGa0098059_1006253 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5188
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F020463Metagenome / Metatranscriptome224Y
F036024Metagenome / Metatranscriptome171Y
F043619Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0098059_100625311F020463GAGMKTERKLRYKIMYIILSQTPDRDGFQGQVALNTARINGFREVSYKDIGGNSQKDDAGYVGTYTEVLMKGATISVADPISTILEKIRDAKVNQT*
Ga0098059_10062534F043619N/AMREEQYWKRTSGEVITVGDMSEHYAKSVLRKMIKKSRQRGQDVLVMRERILLLKIAICKISDTLDEINKDLL*
Ga0098059_10062535F013467N/AMTFGNLRNWVWCEDCLEWKDADEVSFVGIKEDAYGKDLLRFLCDKCGNENENNIISSATRPRG*
Ga0098059_10062537F036024GAGMARIGNEDSFLELDEAKKMSRKIVDNYISEVEDEDGKNAIDEYSWHIVTVEAFEEDWFNDERLKKTGKIKAKYKKLAKNNRVFILEVDWN*
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