Scaffold Ga0098059_1200418

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098059_1200418

Scaffold Ga0098059_1200418

Overview

Basic Information
Taxon OID	3300010153 Open in IMG/M
Scaffold ID	Ga0098059_1200418 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	777
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010167	Metagenome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098059_12004181	F010167	GGAG	MIFTHASMIQEGESALFYRFDRSLNGYMIAGVFIAPNITAKLNFAKVWKYFVSEIVQADDIYCSIPLGVTSSMFENYLDYHDTIDGFKIYKVDNFLKKQYSNYDKHKERAGSDK*

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