Scaffold Ga0127503_10248500

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127503_10248500

Scaffold Ga0127503_10248500

Overview

Basic Information
Taxon OID	3300010154 Open in IMG/M
Scaffold ID	Ga0127503_10248500 Open in IMG/M
Source Dataset Name	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	886
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	USA: Willow Creek, Wisconsin
Coordinates	Lat. (^o)	45.8056	Long. (^o)	-90.0794	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014539	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127503_102485002	F014539	AGTAGG	MKTIFRLAVLALAGTSALGLAGNALATQKLSVKQTTTSLTIKVSQAQTDPQPTRISIYVPSGYTINSSAAPGTRIGSTSGTVFSRDANIPLPLSGDVIAVPPTTNAPGCDPAATHIAVWNLALSVAGQAINLPVHVDQLSGPEAALGAYKLVVCLAPDDVPLGTPGRSPNGARLLDATFTVD

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