Scaffold Ga0098047_10064229

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098047_10064229

Scaffold Ga0098047_10064229

Overview

Basic Information
Taxon OID	3300010155 Open in IMG/M
Scaffold ID	Ga0098047_10064229 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1442
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.201	Alt. (m)		Depth (m)	170
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065136	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_100642293	F065136	AGGAG	MEPNTIRLTKQGNMQYCFANGYILSIGCGPAHYSTNEHEDDAFGLSCEEVEVAIMNPAGGWVALEYDVAGWVPAGNIPSLMRAVENKDWEHCALLCGQEEYIHSENRRDLDPLSIQSQAAGYFAEEDAYA*

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