NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098047_10161062

Scaffold Ga0098047_10161062


Overview

Basic Information
Taxon OID3300010155 Open in IMG/M
Scaffold IDGa0098047_10161062 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.201Alt. (m)Depth (m)170
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023875Metagenome208N
F048555Metagenome148N
F049935Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0098047_101610621F023875N/AITFTHSLFWIIMLFLSLVQFFAYANGLRAQLERQFLKDYNETVKKTLEEQQQEEYNQIRNN*
Ga0098047_101610622F048555N/AMKSVTITIGDYDLEIIEQIFENEKKFEPSDPRDELMIEVMRQVKDNPKLDLGEDEAAEYEKAKTKFSKDLGVDGKRIVKRTLPITNKIS*
Ga0098047_101610623F049935N/AMVNMQTDIDFEFWDAQIKHFVSIVQSDEVSKKDKKVAKTHLIEIQSRLKRDVRDLNKYIKELESEL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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