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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010157 Open in IMG/M |
| Scaffold ID | Ga0114964_10000321 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37211 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (65.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001299 | Metagenome / Metatranscriptome | 727 | Y |
| F012328 | Metagenome / Metatranscriptome | 281 | Y |
| F015856 | Metagenome / Metatranscriptome | 251 | Y |
| F026827 | Metagenome / Metatranscriptome | 196 | Y |
| F030356 | Metagenome | 185 | Y |
| F049577 | Metagenome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114964_100003212 | F001299 | N/A | MNDNKPEYLDDTDPEKNHDYYRQDHGGMITNHNGMADKLLKNNDLYRQMKGDWKRTSWNKGNNIKVTTGRENGKFFITREQMNTDAIAQHCKNYREAAEAGIPDPLAPIGQDGKLQFKWMELPFVISIRISDQYFGGMPWNAIKQDRVLKAQFYRVVQQEYPQYICYPGGKLPIPVAVSYPNRTG* |
| Ga0114964_1000032132 | F026827 | AGG | MGKDINQKRGPTTGNAGNASKRKEFMASKAQSGSEKSALADMVTNALENRGREQFGGRTKEGLEGLHSNTGPKSNPTSDGSKLPGKYKSPRK* |
| Ga0114964_1000032133 | F012328 | AGGA | MKNKSTQEDIWDSNPVEVVTEKKVAKAQPPSSLNALEYDIEGLMTDFPTAKDLERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQSVDEKFVGNTNPYIDKTELVPVEELKPVPERSKELPSSSTLQNSFFSPFIPHPEEAMRAQDKKVDMIFRKYSNGMISYEILGPLARRPHGEKINKYGKVVPEIIKWIDPRTGEQIVVREDGSLTPQGKRLRALMQAKRVNKTNQWDVWVDREFLSLDDSAIANPWDLK* |
| Ga0114964_1000032134 | F049577 | GGA | MIDQSNQIRLVNDTKILQKVNQVHREAFKMKFPGQVEHCMRLTGERLQGLLTKKPADLADTETWAGQANEIRDLCEGLYYLSLINGQYPVEGQ* |
| Ga0114964_1000032138 | F030356 | AGG | MLDIKNIPIDNINQTRKQNANFVRMKNMMDTKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFEFVADGEEDEDAARQATDMVSKVVNQMNDPHFILERWIMDANLHKNGMMMIKPVREQMVRYIETQGTNDQLRAFEQQAAEGGLTALRQSKRRLSVDVKKVMDEVKGETSFHTQSMAQDAIKKFIESMPNLDEPSNIGTMMDNMGELQDGPQNILNSVVERNTVYSAKYKLTGYSINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEATELYPGIDLEEFSKHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPHSRQVSVVTVWNKYDIDGDGELELVEVIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPAKDVYQLPPPSGNLQFLEVAMQRIQQDTMAMIGMTTPQDTFTPEVMAPGNSGIKLQLALSPNQIIQDNTVRNAAEGLKEALWLVWRTLIQYGDDYGVKKLAQSYHPGKQSVFMDYLAWDDMNFCDRKQLHLELALGMNSEENALSRLQIIQKCQTDLYTTVQGMVTSGTLTPDVYKKVKKPFADTLYVLGVKDCDSYLPSDEEIAQMIKQGQEAMKTKEPTPGEKKDLSQAQLNQIKGQQIMTELGGQDAQTQLDYMALAQGKPKVYS* |
| Ga0114964_1000032139 | F015856 | N/A | MINETTIEAYNSRLTIDLGQVKNLTPAQADRVRQYGSQAETLLKNKDLAIFIHHWKFSVADELAGMRDHSPEENSHRVALCNELAGIDSFINSLKRAVYLKGKIGNSEAEAQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |