Scaffold Ga0114960_10212598

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114960_10212598

Scaffold Ga0114960_10212598

Overview

Basic Information
Taxon OID	3300010158 Open in IMG/M
Scaffold ID	Ga0114960_10212598 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1004
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031789	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114960_102125981	F031789	GAGG	MAYNQAFYPMGRTFVLSGTTTNQSANIYADSPSSQYLFVNHEIASTGKAVYVRISSTAGNNAAVANATSGNYGVPIRPAESLVLSGPQCSSSANVFITFITDSGTANVYVTPGEGIG*

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