Scaffold Ga0114967

Basic Information
Taxon OID	3300010160 Open in IMG/M
Scaffold ID	Ga0114967_10005930 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010160 Open in IMG/M

Scaffold ID

Ga0114967_10005930 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9649
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (26.09%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9649

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (26.09%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F005775	Metagenome	390	N
F008615	Metagenome / Metatranscriptome	330	N
F025444	Metagenome	201	N
F026828	Metagenome	196	Y
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_1000593012	F002287	N/A	MSQINKLAYVDGKLGAPSDGQQTTRILFNTIEAPGTTSGLIFFKTFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQYSTAGVLQTFGNTLGLNFQQTLSIIVGNQQVVKNLPIQFNQGVNGQSFDRLHSNAGVDFFGTPSRQNQAAQPCEIRLLTDIVIPPQVSFEVRIDSTNAAYGTGAVVCALSGYGKIFSAGNTF*
Ga0114967_1000593013	F000710	N/A	MANGINMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSTTTSAAPSVITNGMQLRVTLTINNDVVIDDVVAHELGASTGTGISTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
Ga0114967_1000593014	F051646	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYVVIFGYDFSPAGGGITAVDYIGAPVTATLDVEKIRFFQTQQISFYTGVDFFPFIHHIPTNNSIFPFEGDYQAGFTIDTTPIARQVYITSTQDVAITHGLILKAIPATTGTIPVTNRTPGFLTYGGSPQLIQAQTNYGPVLTPQQFMQPSPKDFQDFGLGLLPGNPTDQAFATPDATNGLLEANVHLLSLGATFPTAAATNYYLCMHYAIYSKTIPEQRG*
Ga0114967_1000593020	F003659	GAG	MPLNVNQVMDRYLIALEDVPVYDYPNGTRIGTINKGNATARVYSYVTRPGGQVWFMFDYTIPGTTPGAYYVLDKEGRFRISQAPGNAVISPSSLPGVDVFPAGSKIKTFALYGIIGVLALLLLKK*
Ga0114967_1000593023	F026828	N/A	MITEELITSAIAFLAGWILKRPEFVQKIISKLFTKK
Ga0114967_100059303	F008615	N/A	MNTPNTFGAMMFSRFIKKGWHISFTDSYQDRVCVIPPDRLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT*
Ga0114967_100059306	F005775	N/A	MKKQRPIYTKAQHQIVTPAFVEKKIQMHKTVKWTTKDDRELFIMASASVTRYVPKSEHNNQAPMGFFNLQMGHYNKISIHSRDFEQLADVFDQITLFLRNNANKLDQVVTKELDTYTSHHLTNLLNNEAKP*
Ga0114967_100059308	F025444	N/A	MYLQLAGLEPLDTALNPLAPGAPTYKYDQMYLGQSQDIILPDALFPPNVEGYAKALKDLGDLYGQYTKGKKTPAAVVKTPGMSVIDPATLLLIAKGIYAGVQALSVVFRGQVATAARQRITELYNGNNFNVQNLNKLTARQISDQITAIDSQINMTPKTQFGRQMALARFRLVYQQRFDQVGGGGIGNLPGWVLPAALGLGALLLLRGRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114967_10005930

Overview

Ecosystem & Geography

Associated Families

Sequences