Scaffold Ga0131853_10003931

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0131853_10003931

Scaffold Ga0131853_10003931

Overview

Basic Information
Taxon OID	3300010162 Open in IMG/M
Scaffold ID	Ga0131853_10003931 Open in IMG/M
Source Dataset Name	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26672
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (43.48%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	Petit - Saut dam, French Guiana
Coordinates	Lat. (^o)	5.0626	Long. (^o)	-53.0462	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000008	Metagenome	8622	Y
F015227	Metagenome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_100039311	F000008	N/A	HWGDLGVDGWIILGWISRRWDVGIWTGLGWPRIGTGGGGLCVR*
Ga0131853_1000393123	F015227	N/A	MELARYKLDVVGVQEVRWDKEGTVRAGDYNFSTEKGNENHQLGTGFFVHRRLVSAVKRIEFVSDRFSYIVLRGRWLHIILVNVHAPSEEKSEELKD
Ga0131853_100039316	F000008	GGTGG	MERDRWGDLGVDGWIILGWIYRRWDVGIWTGLGWARIGTGGGGL*

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