NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131853_10069202

Scaffold Ga0131853_10069202


Overview

Basic Information
Taxon OID3300010162 Open in IMG/M
Scaffold IDGa0131853_10069202 Open in IMG/M
Source Dataset NameLabiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5660
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005225Metagenome407Y

Sequences

Protein IDFamilyRBSSequence
Ga0131853_100692022F005225GGALYSIEKCVMVSVYIMCVMVLGCMVQYREMCYGISICNVCNGVGVHGTV*
Ga0131853_100692023F005225GAGMVSVYVMCVMVLGCMVQYREMCYGIRICNVCNGDGVYGTVQRNVLSIHM*
Ga0131853_100692024F005225N/AMCVMVMECMVQYTDMCYGISICNVCNGDGVYGTV*
Ga0131853_100692025F005225GAGMVSECVMCVMVMECTVKYTDMSYGISICNVCNGVGVLGTVKRNMLWYNYM*
Ga0131853_100692026F005225N/AMVSVYVMCVMVMKFTVQYREMCYGISICNVCNGDGVCGTV*
Ga0131853_100692027F005225GAGMVLAYVMFVMVMECAVQYRKMCHGISICNVCNGDGVYGTV*
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