NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131853_10088463

Scaffold Ga0131853_10088463


Overview

Basic Information
Taxon OID3300010162 Open in IMG/M
Scaffold IDGa0131853_10088463 Open in IMG/M
Source Dataset NameLabiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4723
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004007Metagenome457Y
F019492Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0131853_100884632F019492AGGAMAVLPAATPVQLHDSAMDTRTECNVVSIGLWGNCSSACSYCSTVT*
Ga0131853_100884636F004007GGAMLLVQGRGEMAVLSAFTVVLLYHSAMDIWTDSNVVITG*
Ga0131853_100884637F004007GGAMLLLQGRGKMSVLPAVTAVLLHHNAMDTWTGYKVVNIL*

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