Scaffold Ga0131853

Basic Information
Taxon OID	3300010162 Open in IMG/M
Scaffold ID	Ga0131853_10129597 Open in IMG/M
Source Dataset Name	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010162 Open in IMG/M

Scaffold ID

Ga0131853_10129597 Open in IMG/M

Source Dataset Name

Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3494
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	15 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

3494

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

15 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Ecosystem

Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	Petit - Saut dam, French Guiana
Coordinates	Lat. (^o)	5.0626	Long. (^o)	-53.0462	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Petit - Saut dam, French Guiana

Coordinates

Lat. (^o)

5.0626

Long. (^o)

-53.0462

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_1012959710	F005225	GAG	MVSVYVMCVMVMQCVVQYTEKCYFISICNVCNGDAVYGTV*
Ga0131853_1012959711	F005225	GAG	MVSVYIMCVMVMECTVQYREMCYGISICNVCDGDGVYGTV*
Ga0131853_1012959712	F005225	GAG	MVSVYVMCVMVMEFTVQYREMCYGISICNVCNGDAVYGTV*
Ga0131853_1012959713	F005225	GAG	MVSVYVMCVMVMQCTVQYREMCYDISICNVCNGDGVYGTV*
Ga0131853_1012959714	F005225	GAG	MISVYVMCVMVMEFTVQYREMCYGISICNVCNGDGVYGTV*
Ga0131853_1012959715	F005225	GAG	MVSVYVMCVMVMECMVQYREMCCGISICNVCNGDGVYGTV*
Ga0131853_1012959716	F005225	GAG	VALVYVMCVMVMECTVLYREMYYGISICNVCNGDGVYSTV*
Ga0131853_1012959717	F005225	GAG	MVSVYVMCVMVMEFTVQYREMCYGISICNVCNGDGVYGTV*
Ga0131853_101295972	F005225	GAG	MVSVYVMRVMVMECTVKYREMCYGISICNACNGDGVYCTV*
Ga0131853_101295973	F005225	GAG	MVSVYVMRVMVMECTVQYREMCYGISICNVCNGDGVYCTV*
Ga0131853_101295975	F005225	GAG	MVSVYVMCVMVMECMVQYREMCYSISICNVCNGDGVYGTV*
Ga0131853_101295976	F005225	GAG	MVSVYVMRVMVMECTVQLREMCYGISICNVCNGDGVYGTV*
Ga0131853_101295977	F005225	GAG	MVSVYVMCVMVMECTVQYREMCYGISICNVCNGDGLYGTV*
Ga0131853_101295978	F005225	GAG	MVSVYVMCVMVMDCMVQYREMCYGISICNVCNGDGVYGTV*
Ga0131853_101295979	F005225	GAG	MVSVYVMCVMVMECTVQYREMCYGMSICNACNGDGVYGTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0131853_10129597

Overview

Ecosystem & Geography

Associated Families

Sequences