NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131853_10129879

Scaffold Ga0131853_10129879


Overview

Basic Information
Taxon OID3300010162 Open in IMG/M
Scaffold IDGa0131853_10129879 Open in IMG/M
Source Dataset NameLabiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3487
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000031Metagenome4897Y
F000032Metagenome4750Y
F038732Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0131853_101298794F038732N/AVEKGIKEKRNKKATGDDVPGYVLKLLGEGVLKIMTKFINTIYETGEWPKDLMEVTKIALKKKPQATKCSDHRTIRIIAHTAKIVVKILRRRIEEKIEDVLGEDQLDLEEEEELGMQLGY*
Ga0131853_101298796F000032AGAAGGMISWPDRVRNEEVLLRVKEQRIILHEISKRKANWIGHILRRNCLLQEVIDGNIKGG*
Ga0131853_101298797F000031AGGGGGVTVRRGRRRRKLLDELKERKGYSHLKEEALDRTMWRAHFGRGFGPVVRQTTK*
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