Scaffold Ga0131853

Basic Information
Taxon OID	3300010162 Open in IMG/M
Scaffold ID	Ga0131853_10134836 Open in IMG/M
Source Dataset Name	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010162 Open in IMG/M

Scaffold ID

Ga0131853_10134836 Open in IMG/M

Source Dataset Name

Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3381
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

3381

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Ecosystem

Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	Petit - Saut dam, French Guiana
Coordinates	Lat. (^o)	5.0626	Long. (^o)	-53.0462	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Petit - Saut dam, French Guiana

Coordinates

Lat. (^o)

5.0626

Long. (^o)

-53.0462

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_1013483610	F005225	GAG	MVSVYVMCVMVVEFTVQYREMCYGISIRNVCNGDGVYGRV*
Ga0131853_1013483611	F005225	GAG	MVSVYVMCVMVMECTVHYREMGYGISICNVCNGGGVYSTV*
Ga0131853_1013483612	F005225	GAG	MVSVYVMCVMVIECKVHYREMGYGISICNVCNGDGVYGTL*
Ga0131853_1013483613	F005225	GAG	MVLVYVMCVMVMECTVHYREMGYGISICNVCNGDRV*
Ga0131853_1013483614	F005225	GAG	MVSVYVMCVMVMECTVHYREMGYGTSICNVCNGDGVYGTL*
Ga0131853_1013483615	F005225	GAG	MVSVYVMCVMVTECMVHYREMGYGISICNVCNGDGVYGTL*
Ga0131853_1013483616	F005225	GAG	MVSVYVMCVMVMECTVRYREMCYGISICNVCNGDGVYGTL*
Ga0131853_1013483617	F005225	GAG	MVPVYVMCVMVMECTIHYREMGYGISICNVCNGDGVYGKV*
Ga0131853_1013483618	F005225	N/A	KCVMVSVYVMCVMVMECMVQYREMCYGISICNVCNGDGVYDTVLRNVLWYQYM*
Ga0131853_101348364	F005225	GAG	MISVYVMCVMVIDCTVLYGEICYGISVCRVFNVDGVYGRIQRNVLWYQYI*
Ga0131853_101348365	F005225	GAG	MVSVYVMCVTVMECTVQYREICYCINIFNVCNGDGVYGTV*
Ga0131853_101348366	F005225	GAG	MVSVYIMCAMVMHCTVEYREMCYGISICKVCNGDEIYGTVLRNVLWYQYM*
Ga0131853_101348367	F005225	GAG	MVSVYVMCVILMECKLQYREMCYGISICNVCNGDGVYSRVERNVLWYQYI*
Ga0131853_101348368	F005225	GAG	MVSVYVMCVMVMECTVYYREMGYGISICNVCNIDGV*
Ga0131853_101348369	F005225	GAG	MVSVYVMCVMVMECTVEYREMCFGISICNVCNGDGVYSTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0131853_10134836

Overview

Ecosystem & Geography

Associated Families

Sequences