NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126306_10023781

Scaffold Ga0126306_10023781


Overview

Basic Information
Taxon OID3300010166 Open in IMG/M
Scaffold IDGa0126306_10023781 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4072
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025442Metagenome201Y
F029034Metagenome189Y
F055429Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0126306_1002378110F025442AGGVKAQTTIQILRCLTLGGYTARVVGGRLETEGPQPLAGPLPASIKARRDELIDFLNEWADGVWPPAPASGLREVQECLECGIAVALDVVEAAQRRAA*
Ga0126306_100237814F029034N/AMRDSQYCLNHDPDRAEVNRRRSSKGGKRGGRGRPSAELSRLQRRFEELAEAVLEGEVERGVGAVAGQLLNGARACIRDSLEAREQEELVERLEALEEALARGEDRPYAS*
Ga0126306_100237818F055429GGCGGLTDVQRIVLDFRSGELVARVLYRSSLDGPNSGTKARAREVTDLARTGLQDALVALDGGDVTMCGTSGFTTREDVLLAATSSSEAKLVKGA*
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