NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126306_11004215

Scaffold Ga0126306_11004215


Overview

Basic Information
Taxon OID3300010166 Open in IMG/M
Scaffold IDGa0126306_11004215 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)680
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029034Metagenome189Y
F039477Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0126306_110042151F039477GAGGMGLRSKLRHLERAASEDLASFILEDGSRYYFNPTSAEIFLHSMACLRAQGECEPFPKPPETVKALARARDRRAVLNQLYPGGSFGIFPYEVEALVERGELLPRSMVAGRELGE
Ga0126306_110042152F029034N/AMRNSAFCIGHDPDQAEARRRRASKGGKRGGRGRPSAELARLQARFEDLAEKVLSGEIERGVGAVAGQLLNGARACVRDALAAREQEELVARLEGLEEALEQRKEEGRYGA*
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