NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124936_1041219

Scaffold Ga0124936_1041219


Overview

Basic Information
Taxon OID3300010179 Open in IMG/M
Scaffold IDGa0124936_1041219 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_B MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1686
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0124936_10412192F008135N/AMNDPRTERLLVSAGASIARVLDARQRHVVALALEVCWYIVAALPPDDELTFGDMVRLLRWFGEGFNRDAEGDDGDG*
Ga0124936_10412194F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADLSMGGAEGV*
Ga0124936_10412195F015735GAGGMVVYHHWSVEWHSRDVDPPGGLPRVVCIARRAVSDPFAGPGPFPPDIDRAVRAWNLVASGGARDYGAGYEVAWRVAVVADDADGDAPSGDWSDDPVYRARCRLLRWIMRSQCPIPALADHFAAEHFRDHPEYFGLPEPGA*
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