NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124924_1233655

Scaffold Ga0124924_1233655


Overview

Basic Information
Taxon OID3300010193 Open in IMG/M
Scaffold IDGa0124924_1233655 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049435Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0124924_12336552F049435N/AVFRCFIDSLPASRAQSEIVFYAHSKPFIIPKLALRIYLGFISEDSNPTDVENVKALMRAKKGGIMSEENQQLFTDPILIYDIYAVNTPDGVKLDGFFDLSFNVGRLYELQDYFSKISKDMERIRRSMSKYASPKRDAISIVTPMPSPNQIYQSLEQSLKTIVDSGVLKLSSIAADYICDFISLLFNKGVQEIIYEIWDVDLLVVRSGDNRYFDVFDTWDEEAEQRGWESPAFDDES*
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