NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124922_1175373

Scaffold Ga0124922_1175373


Overview

Basic Information
Taxon OID3300010197 Open in IMG/M
Scaffold IDGa0124922_1175373 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0124922_11753731F002795AGGAGGMATDSGLVLRGMVAAYREFTSRKNGRVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVSFPARLQFLHDGSGRPVIKLYVDEG
Ga0124922_11753732F002229N/AMEVDMVTLLTLDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSCAGWWTVIGGRRVTATLAAIGWCWVADGLGARGYWSPALACIPGEVRALCGGCAEDEDEEAGDGDG*
Ga0124922_11753733F098761N/ASLTRDMILWGKRGVICVYTSPSFATVDVRLRRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDALVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG*
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