NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136216_1067180

Scaffold Ga0136216_1067180


Overview

Basic Information
Taxon OID3300010231 Open in IMG/M
Scaffold IDGa0136216_1067180 Open in IMG/M
Source Dataset NameSoil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil ? week5, replicate 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location
Location NameBangor area, North Wales, UK
CoordinatesLat. (o)53.24Long. (o)-4.01Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097545Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0136216_10671801F097545N/AQLGHVSGSDGTTTLSDARAMTVTLGDVTLWVGPGGALNDNGTATDVTDATTLSDDTVQAGDLGFSGHVDSMKLATLKDAGDPAVATDDVSYLALDISGLSASLVGLEDVLAFNAWDVGVLLNSASDSDGNATTTPGKLDWASFAVTDGIGLPGFNDDLNAGVDLSISGAATLNVLSGLA

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