NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136235_1000055

Scaffold Ga0136235_1000055


Overview

Basic Information
Taxon OID3300010233 Open in IMG/M
Scaffold IDGa0136235_1000055 Open in IMG/M
Source Dataset NameFilterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47065
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (72.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location NameConwy River, Conwy, North Wales, UK
CoordinatesLat. (o)53.2Long. (o)-3.82Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073471Metagenome / Metatranscriptome120N
F101801Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0136235_100005510F073471N/AMTCLKAFRVRRCNSIXXXXADEYGDWLGISNVAQQMFLADITMDASRNLSYRGALTSNLIAIGAFEAAATAQSSARIDLLDNEYMLSNTIRKSESQLMGNAVPGRDGGLYTSAMHPYVVYDFMSDNSAGSAVDTLKRSESGANILKTDMTRGYSVLEWAGVRIIRTQTVPTYANYPSIGKTGYATYIVGREAVMASELLGVRVPRNPSFKVNVKTFGDNDIDLSNPMLQTRAIVSYDWFLGVVARPNTNNTPGFRRIRCEVSAV*
Ga0136235_100005557F101801GAGVDLFSPEYFQNKQRQRIAKMKPQDFEEWDEAKERYIKTKIEPMLDTYRQSDHNWFKDFSRRKGDSMHASDLIFRLQRLNPHIFVQNQINFPDDWGLYTSAMGRVQFLTGLPKGWLTEFSYALVDDRDLPTEERRGWRTTVIYCLMKGAITWEQVLAEFGEPQDGFNEQRWMEITTDFRQGGDQIFLRNVANCLE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.