Scaffold Ga0136250_100001743

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136250_100001743

Scaffold Ga0136250_100001743

Overview

Basic Information
Taxon OID	3300010237 Open in IMG/M
Scaffold ID	Ga0136250_100001743 Open in IMG/M
Source Dataset Name	Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale Center for Genome Analysis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1992
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	70.4	Long. (^o)	-148.7	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024691	Metagenome	204	Y
F041530	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136250_1000017432	F024691	GGAG	MRYHTEGQRDKRKLKTHIPLLEIKASKRKSTKHDRVLVILSTLVRNFSERVNVDHVKPPIGLDKTLKLTDERGRKYDIAFIYEGELFLVEVKRCGKWQ*
Ga0136250_1000017433	F041530	GAGG	MAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVRQAYGKIYQKWTQLSEEEKAYWNELGKPHKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDTVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGSDFFSFFDDF

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