NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136250_100004520

Scaffold Ga0136250_100004520


Overview

Basic Information
Taxon OID3300010237 Open in IMG/M
Scaffold IDGa0136250_100004520 Open in IMG/M
Source Dataset NameTerrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale Center for Genome Analysis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)70.4Long. (o)-148.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004971Metagenome416Y
F076711Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0136250_1000045201F076711GAGGMGVGWAICPVCGKKFEGSYFPDTGVNTAVHMVQRHMVLRHSKKITDSGIVVAKLPDDYIRASELKTFVAGGTGNTRLQGRAHIVCVCGRYFDITLEEHYDEGKKIEVVVREYDDVGRYKKISERRVVERVGHIDVSKFAELWERAWERIKEDIIREHLMEHGIHL*
Ga0136250_1000045202F004971GAGGMEIKIENLDLFEDGWFEALKCLAIQKISEATGELCRLATGFCNDDEAFHLTAGGRVFHVCYSDPLLVFVVEEVRCPKCGQWVPGNVLEEHLEEHEVM*
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