NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124938_1023576

Scaffold Ga0124938_1023576


Overview

Basic Information
Taxon OID3300010254 Open in IMG/M
Scaffold IDGa0124938_1023576 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_B MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029452Metagenome / Metatranscriptome188Y
F033055Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0124938_10235761F029452GGGGGMIYEYRCANCGWLTVAKRTVEQRDVVPRCERCGTLTKRVFPPRAQIVVPRAFSLECAREAGKLVLPSTPEEKRY
Ga0124938_10235762F033055GGAGGMWVYPNQVIQNDNWTTNTGVGILLALGENDGLYIYNTSAINLLHLGMPSEVVNCELRVRSDGLNPPLFLSFYLSGNIVGTISLFSTNNWETYTLTVDRWDSVVLEADFGGIIGVDFLRAEPYGGAPTKRTLTGVGT*
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