NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124912_1137201

Scaffold Ga0124912_1137201


Overview

Basic Information
Taxon OID3300010272 Open in IMG/M
Scaffold IDGa0124912_1137201 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018544Metagenome / Metatranscriptome234Y
F038253Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0124912_11372011F038253N/ATHDKNMTGVQEELLRIIQSDEARELIENMVNRMAVIEEAYYRIRELREAVQPYIPDNSEHDEEYWLAAYLVKPHASDVIEKFSQLREIQHKLAKIEGQVQEMDRKESYLEDKLGNVDSAQENTGDSIYKLIGEDADPYVSLGDSDLYDLLYESIREWAEKQLSTNAS*
Ga0124912_11372012F018544N/AMLGMTTQAQASGTELKVRIEKALNEKGLKKLITNLEKELNGEHSFLPHEVETQIRREIASAGVAVSQHGGWYRCIAAYLILPRLEELLQVKSTGGEQNIAPIVQKLRNEALRESLSTFGLEVPARYARTSSATGRTHVRLSREQKQQLVENFLDALPTFE
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