Scaffold Ga0129310_1003887

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129310_1003887

Scaffold Ga0129310_1003887

Overview

Basic Information
Taxon OID	3300010275 Open in IMG/M
Scaffold ID	Ga0129310_1003887 Open in IMG/M
Source Dataset Name	Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022A metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9232
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Western Lowland Gorilla Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.78	Long. (^o)	-88.79	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087335	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129310_10038878	F087335	N/A	MCIKERMKDMIELYFNDANLLPENREEEQYAEAALNNILAGKMADTGMCIMPCFYDAPLRNGLLYHLDDGTMLRIRPILNEAGEPELLIRCVTEETVEEMMEVVKP*

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