NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129308_1045579

Scaffold Ga0129308_1045579


Overview

Basic Information
Taxon OID3300010280 Open in IMG/M
Scaffold IDGa0129308_1045579 Open in IMG/M
Source Dataset NameRing-tailed lemur group fecal microbial communities from Wisconsin, USA - L827 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Ring-Tailed Lemur Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.07Long. (o)-89.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061388Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0129308_10455793F061388N/AYATQFRATALPRNERGAYYSPRDDSVHLSIHSVAQGDSISTPYSVLFHEYGHMTDYLIARGEGRSRYSAYSDLFQGIGADGKPILRRSSSGGLLGRTAKDELEGHLSRIRSRNPSMTRDQAARRLVSEAMGKYSVRDRSDISDMFEGAGIGIPYPLGSGHGLDYWSARGNGKEIFAEIVSAEAAHPGSLKAIKEYFPKTYQVYQDMVKARKKK*

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