Scaffold Ga0129312_1000207

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129312_1000207

Scaffold Ga0129312_1000207

Overview

Basic Information
Taxon OID	3300010283 Open in IMG/M
Scaffold ID	Ga0129312_1000207 Open in IMG/M
Source Dataset Name	Orangutan group fecal microbial communities from Wisconsin, USA - O827 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	60034
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (89.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.07	Long. (^o)	-89.4	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129312_100020721	F026489	GGA	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKRATPEKTEDSRLFGVKIF*

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