Scaffold Ga0116210_1006633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116210_1006633

Scaffold Ga0116210_1006633

Overview

Basic Information
Taxon OID	3300010288 Open in IMG/M
Scaffold ID	Ga0116210_1006633 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4784
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	South Africa: Tshipise
Coordinates	Lat. (^o)	-22.6092	Long. (^o)	30.1749	Alt. (m)		Depth (m)	2 to 3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000353	Metagenome / Metatranscriptome	1246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116210_10066331	F000353	N/A	QERSLKKLITKLAKELDGEHSFLPHDVEAQIREAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLRQVKSTAGDKNVTPIVQRLRNEALRESLSAFGLEVPARYARTPSSTGQPRVRIPREQKQQVVENFLDALPTFEALKEVMDTLPSNTNLTVKQIRSLVKRYFSIANRLQTKTYQEETTQE*

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