NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129299_1081080

Scaffold Ga0129299_1081080


Overview

Basic Information
Taxon OID3300010289 Open in IMG/M
Scaffold IDGa0129299_1081080 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.4127Long. (o)-118.504Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026013Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0129299_10810801F026013N/ASLTVTDTNTVDLNLVGSNLSANVIISPNAGNALQSLANGLYVATGGGYSLSNCAGTPLTVGAQVLTCPSAPQPLNVNNTLLSFASPNTGQRTMSAKQCPEPQLGDYIITADDNGNVRYIRMQEAVFYNLNAGNLIVFPNLALVTLQPPNTTTGTIDSASFTNPLICYAVFTRGLVSGVLQHSYNQSPGVSEVLARISSLRDLISNINNYNTPGITNTPLTSHAWRNDTVVASGLNTNRLAGLGTGIAPGATATFNRSMFVATTSANFWYATMENWSASILIFKL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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