NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129299_1111233

Scaffold Ga0129299_1111233


Overview

Basic Information
Taxon OID3300010289 Open in IMG/M
Scaffold IDGa0129299_1111233 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.4127Long. (o)-118.504Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062336Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0129299_11112331F062336GGAMSTITDLSIYKATEPVATFVRCTWINPHPTKTGTPVEHGGIIWDASEPIECANKPFSVTYSNGKVQEVCGARGLVIVPVRLSNPYTIVTSSDPTLLQQVIVPQALYMRSDDVPSEFRVASALTLFFVLRDDPANTLMAVQLRSHGASLLNRAYTDWARTAAKLGNQFLRVPLDVRALPVKFGAGEQVMVGRAQKSPIAAPTFKPLRQYKSADELQADLVPPERFEELRRIAEDDLLKQYPAIPTVKIAPTIDAAYVALGDA
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