Scaffold Ga0126333_1041549

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126333_1041549

Scaffold Ga0126333_1041549

Overview

Basic Information
Taxon OID	3300010290 Open in IMG/M
Scaffold ID	Ga0126333_1041549 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-54 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2269
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Hawaii, USA
Coordinates	Lat. (^o)	21.4686	Long. (^o)	-157.8184	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004022	Metagenome	456	Y
F014477	Metagenome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126333_10415492	F014477	GGCGG	LYTGMLRPRGPCRLEAKSFGLGLDLGLMASGLGLIEIIGLVASNIYIHITFIFTLH*
Ga0126333_10415493	F004022	GAGG	MRPRRRPRPERVRPRTRPRPKFFFEAEVTMYEAEARHVREQLSVYEHED*

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