NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126326_1052565

Scaffold Ga0126326_1052565


Overview

Basic Information
Taxon OID3300010292 Open in IMG/M
Scaffold IDGa0126326_1052565 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-67 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1984
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.2833Long. (o)-157.8469Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063240Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0126326_10525653F063240GGCGGVLSWPLIEARRVLRRAGRAVDIGVELAIDRGPYSVEAGR*
Ga0126326_10525654F063240GGCGGVLSWPLIEARTVLRRAGRAVDIGVELAIDRGLYSVEAGKEGGRYWC*
Ga0126326_10525656F063240GGCGGVLSWPLVETHTVLRRAGRAVDIGVEVAIDRGPYSVEAGREGGGYWC*
Ga0126326_10525657F063240GAGMEARTVLRRAGRAVDIAVELAIDRGLYSVEAGREGGRY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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