NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126326_1135103

Scaffold Ga0126326_1135103


Overview

Basic Information
Taxon OID3300010292 Open in IMG/M
Scaffold IDGa0126326_1135103 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-67 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.2833Long. (o)-157.8469Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025894Metagenome199Y
F032113Metagenome180Y
F065306Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0126326_11351031F065306N/AVKVTGDDKFMGSGCSKGEKRTEVIEENREWFEISGRRWRMIDIED*
Ga0126326_11351032F025894GAGVTEDDSNDEKSETEVGSCVKGSRMRKAVPPPEDEMMLELLWGVLISE*
Ga0126326_11351033F032113N/AVWRSAVQKFSSGGSGFDPSFSKTEKVRVVGVDQIRQCSTMKRLENGADVDSAQSEVSWARIQFNVTRKNEKGEEKRTTETECALASKEQKDCRLGTNAVGVLSASGEVQGRMDLARR*
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