Scaffold Ga0116204_1026695

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116204_1026695

Scaffold Ga0116204_1026695

Overview

Basic Information
Taxon OID	3300010293 Open in IMG/M
Scaffold ID	Ga0116204_1026695 Open in IMG/M
Source Dataset Name	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2299
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Lake Kivu
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)		Depth (m)	52
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017288	Metagenome / Metatranscriptome	241	Y
F028095	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116204_10266951	F028095	N/A	ENKQFKRLVDEYVRWCKDGGGYEEPRETYEKDIIGCLFEFDLDGYQLAEHLKDTVYIEPNSELVEILDIAFYVKDSLNKELVYQWVKENFLEIPIDVIGKKVSAKQGYKKYENHYISTIKPETYEVTITEDVNKYPAGGWVIGYENVTIL*
Ga0116204_10266954	F017288	AGGA	MADNKTPYELRWDILREMISVTKDEWFTKKEIAERNAEKSGKQLEYHGDFPLHDAVQRAENVYNQFICKK*

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