NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116204_1092192

Scaffold Ga0116204_1092192


Overview

Basic Information
Taxon OID3300010293 Open in IMG/M
Scaffold IDGa0116204_1092192 Open in IMG/M
Source Dataset NameAnoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)52
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0116204_10921921F000450N/AMKGYKVGDRANFGFVQPNGNTIVLYGHWAGYQMLGKLADAVIAARPRWNDPAYATRIAISQIIKDEWNSETGFGLHVNEIADNEHKIAIVDFQQQIFSLHEDDSYSNTSNKVRGMKNEAIFTMDLSAFCEKYALDGLLTV*
Ga0116204_10921923F007470AGGAGMDYQDGFEDGVKFTREVIIANIRLWAEKSEEGQVYDDIADRLEFGTVDYDL*
Ga0116204_10921924F000311N/ACRFSGMELMYFELTAPDKLSFEMAYWDAQMVGLDPQVIGALTFNIGTGSIEKVSRIRDKHDLKETYVSDHEPTGYTRR*
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