NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126332_10082173

Scaffold Ga0126332_10082173


Overview

Basic Information
Taxon OID3300010294 Open in IMG/M
Scaffold IDGa0126332_10082173 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-42 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1854
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.4686Long. (o)-157.8184Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000002Metagenome15118Y
F000005Metagenome10444Y
F001452Metagenome691Y

Sequences

Protein IDFamilyRBSSequence
Ga0126332_100821731F001452N/AGKIWEWDLSFRREWEWDGNGNEVIEMGGNWYEKSVPAHLYLE*
Ga0126332_100821732F000002GGAVSQYQKGKTYLDFTEVRDSKWQWHHLGHMQVCTLLQTDTHAGTPPLSFYRPDAIPVTQPTALKR*
Ga0126332_100821734F000005N/AYQKGKTNLDFTEARDSEWQWNPLGHMQVCTSLQTDNHASTPSLSFLQAGCPSHRPTNSVKALKAKAL*
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