NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126325_10279216

Scaffold Ga0126325_10279216


Overview

Basic Information
Taxon OID3300010298 Open in IMG/M
Scaffold IDGa0126325_10279216 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-14 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.2608Long. (o)-157.7866Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063240Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0126325_102792161F063240GGTGGLSWPLIKACTVLRRARRAVDIGVELAIDSGQYSVE
Ga0126325_102792162F063240GGAGGLVLSWPLNQASTVWRRARRAVDIGVELDIDRRPYNVEAGKEGGGYWC*
Ga0126325_102792164F063240GGTGGLSWPLIEARTVLRRARRAVDIGVELAVDRGPYSVEACKEGGGYWC*
Ga0126325_102792165F063240N/AILVLSWPLIEARTVLRRARRAVDIGVEVAIDSGQYSVEACKEGGG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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