NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129351_1055162

Scaffold Ga0129351_1055162


Overview

Basic Information
Taxon OID3300010300 Open in IMG/M
Scaffold IDGa0129351_1055162 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1622
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.0306Long. (o)-76.0464Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F076006Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0129351_10551623F001120N/AMSQPKSPLNFDRTIGGFNITEHGVKSYTKSIKLGPFQLTLNARKSGILGSISIPGTGLSKRNIKLF*
Ga0129351_10551625F001807N/AMTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATRLDPEEWAPALCEATIELDPEEPIPLDEDGFCRYLDQLDPQWQVLSPDDI*
Ga0129351_10551627F076006N/AMQFQLPSNLQTELLAYDPTLKVLAQKAKTTTAKKAKYPLGNIPHLIPHNVVREADQ
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