NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129351_1077246

Scaffold Ga0129351_1077246


Overview

Basic Information
Taxon OID3300010300 Open in IMG/M
Scaffold IDGa0129351_1077246 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1348
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.0306Long. (o)-76.0464Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076031Metagenome118N
F087880Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0129351_10772461F087880GGAGMENNVNVIDMEKEQLKQVIKNLAKKYNMTASDLATQAGVAPSTITGFLNNVPGRGHYGLSARTQSKISDAFPEFREQIEKPQMIASTFSVPIIGMWDADYRVNGLQLGMPSSFLTSWSNEMDNYSAVIRSPDFFSKLNLHKENRLYLFKNVYVDSLNETENKQVYATTEHGNFIGYQIKGKDAYYLNDFFNKRIEIAGKVLKASKIEWTRQV*
Ga0129351_10772462F076031N/AMNDKSQNSTLIDMWYPSRMDIENCPLDYFVIKYIHGLEPEQMPPPNAKMRSGSTVESCVADILQGRPEQEARQHWQHVLDQHFPINDKDEHQKNVCIGQFQDVVTNLLAAFREINKDPTDFQELVKGEGKGIDVAMGGFVDVTAKDSIIE
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